Article

Machulin, Andrey V., Abramov, Vyacheslav M., Kosarev, Igor V., Deryusheva, Evgenia I., Priputnevich, Tatiana V., Panin, Alexander N., Manoyan, Ashot M., Chikileva, Irina O., Abashina, Tatiana N., Blumenkrants, Dmitriy A., Ivanova, Olga E., Papazyan, Tigran T., Nikonov, Ilia N., Suzina, Nataliya E., Melnikov, Vyacheslav G., Khlebnikov, Valentin S., Sakulin, Vadim K., Samoilenko, Vladimir A., Gordeev, Alexey B., Sukhikh, Gennady T., Uversky, Vladimir N. and Karlyshev, Andrey V. (2024) A novel bifidobacterium longum subsp. longum T1 strain from cow’s milk : homeostatic and antibacterial activity against ESBL-producing escherichia coli. Antibiotics, 13(10), p. 924. ISSN (online) 2079-6382

Karlyshev, Andrey V. and Gould, Simon (2023) 'Ligilactobacillus salivarius' 2102-15 complete genome sequence data. Data in Brief, 50, p. 109564. ISSN (online) 2352-3409

Abidueva, E. Y., Kudryashova, E. B., Ariskina, E. V., Liu, Sh.-W., Sun, Ch.-H. and Karlyshev, A. V. (2023) 'Alkalisalibacterium limincola' gen. nov., sp. nov., an alkaliphilic bacterium isolated from an alkaline, saline lake of Buryatia in Russia. Microbiology, 92(1), pp. 11-20. ISSN (print) 0026-2617

Abramov, Vyacheslav M., Kosarev, Igor V., Machulin, Andrey V., Priputnevich, Tatiana V., Chikileva, Irina O., Deryusheva, Evgenia I., Abashina, Tatiana N., Donetskova, Almira D., Panin, Alexander N., Melnikov, Vyacheslav G., Suzina, Nataliya E., Nikonov, Ilia N., Selina, Marina V., Khlebnikov, Valentin S., Sakulin, Vadim K., Vasilenko, Raisa N., Samoilenko, Vladimir A., Uversky, Vladimir N. and Karlyshev, Andrey V. (2022) 'Limosilactobacillus fermentum' Strain 3872 : antibacterial and immunoregulatory properties and synergy with prebiotics against socially significant antibiotic-resistant infections of animals and humans. Antibiotics, 11(10), p. 1437. ISSN (online) 2079-6382

Karlyshev, Andrey V. and Dennehy, John J. [Editor] (2022) Complete genome sequencing of 'Campylobacter jejuni' strain X reveals the presence of pVir- and pTet-like plasmids. Microbiology Resource Announcements, 11(7), ISSN (print) 2576-098X

Abramov, Vyacheslav M., Kosarev, Igor V., Priputnevich, Tatiana V., Machulin, Andrey V., Abashina, Tatiana N., Chikileva, Irina O., Donetskova, Almira D., Takada, Kazuhide, Melnikov, Vyacheslav G., Vasilenko, Raisa N., Khlebnikov, Valentin S., Samoilenko, Vladimir A., Nikonov, Ilya N., Sukhikh, Gennady T., Uversky, Vladimir N. and Karlyshev, Andrey V. (2021) S-layer protein 2 of vaginal 'Lactobacillus crispatus' 2029 enhances growth, differentiation, VEGF production and barrier functions in intestinal epithelial cell line Caco-2. International Journal of Biological Macromolecules, 189, pp. 410-419. ISSN (print) 0141-8130

Abramov, Vyacheslav M., Kosarev, Igor V., Priputnevich, Tatiana V., Khlebnikov, Valentin S., Vasilenko, Raisa N., Pchelintsev, Sergey Yu., Karkischenko, Vladislav N., Machulin, Andrey V., Abashina, Tatiana N., Samoilenko, Vladimir A., Gasanov, Melik T., Uversky, Vladimir N. and Karlyshev, Andrey V. (2021) Направленная регуляция микробиома человека : вклад в решение демографической проблемы в России = Directed regulation of the human microbiome : contribution to the solution of the demographic problem in Russia. Journal Biomed, 17(3E), pp. 99-105. ISSN (print) 2074-5982

Machulin, Andrey V., Kosarev, Igor V., Abashina, Tatiana N., Abramov, Vyacheslav M., Uversky, Vladimir N. and Karlyshev, Andrey V. (2021) Структурно-функциональные свойства термолабильного бактериоцина, продуцируемого штаммом Limosilactobacillus fermentum IIE MD-150 = Structural and functional properties of thermolable bacteriocin produced by the Limosilactobacillus fermentum IIE MD-150 strain. Journal Biomed, 17(3E), pp. 114-117. ISSN (print) 2074-5982

Kosarev, Igor V., Vasilenko, Raisa N., Abramov, Vyacheslav M., Sakulin, Vadim K., Khlebnikov, Valentin S., Pchelintsev, Sergey Yu., Machulin, Andrey V., Abashina, Tatiana N., Samoilenko, Vladimir A., Uversky, Vladimir N. and Karlyshev, Andrey V. (2021) S-белок пробиотического штамма Lactobacillus crispatus 2029 предотвращает рост проницаемости монослоя Caco-2 энтероцитов человека, индуцируемый возбудителями кишечных инфекций = S-protein of the probiotic strain lactobacillus crispatus 2029 prevents the growth of permeability of the Caco-2 monolayer of human enterocytes induced by intestinal infections. Journal Biomed, 17(3), pp. 79-83. ISSN (print) 2074-5982

Karlyshev, Andrey V., Kudryashova, Ekaterina B., Ariskina, Elena V., Conroy, Ava P. and Abidueva, Elena Y. (2021) Draft Genome Sequence of 'Coralloluteibacterium stylophorae' LMG 29479[sup]T. Microbiology Resource Announcements, 10(27), ISSN (online) 2576-098X

Karlyshev, Andrey (2021) Complete genome sequence of 'Campylobacter jejuni' strain G1, isolated from a patient with Guillain-Barré syndrome. Microbiology Resource Announcements, 10(30), e00505-21. ISSN (online) 2576-098X

Abdel-Mageed, Wael M., Al-Wahaibi, Lamya H., Lehri, Burhan, Al-Saleem, Muneera S. M., Goodfellow, Michael, Kusuma, Ali B., Nouioui, Imen, Soleh, Hariadi, Pathom-Aree, Wasu, Jaspars, Marcel and Karlyshev, Andrey V. (2021) Biotechnological and ecological potential of 'Micromonospora provocatoris' sp. nov., a gifted strain isolated from the Challenger Deep of the Mariana Trench. Marine Drugs, 19(5), p. 243. ISSN (online) 1660-3397

Abdel-Mageed, Wael M., Lehri, Burhan, Jarmusch, Scott A., Miranda, Kevin, Al-Wahaibi, Lamya H., Stewart, Heather A., Jamieson, Alan J., Jaspars, Marcel and Karlyshev, Andrey V. (2020) Whole genome sequencing of four bacterial strains from South Shetland Trench revealing biosynthetic and environmental adaptation gene clusters. Marine Genomics, 54, p. 100782. ISSN (print) 1874-7787

Pepoyan, Astghik Z., Manvelyan, Anahit M., Balayan, Marine H., McCabe, Gavin, Tsaturyan, Vardan V., Melnikov, Vyacheslav G., Chikindas, Michael L., Weeks, Richard and Karlyshev, Andrey V. (2020) The effectiveness of potential probiotics 'Lactobacillus rhamnosus' Vahe and 'Lactobacillus delbrueckii' IAHAHI in irradiated rats depends on the nutritional stage of the host. Probiotics and Antimicrobial Proteins, ISSN (print) 1867-1306 (Epub Ahead of Print)

Abramov, Vyacheslav M., Kosarev, Igor V., Priputnevich, Tatiana V., Machulin, Andrey V., Khlebnikov, Valentin S., Pchelintsev, Sergey Yu, Vasilenko, Rasia N., Sakulin, Vadim K., Suzina, Natalia E., Chikileva, Irina O., Derysheva, Evgenia I., Melnikov, Vyacheslav G., Nikonov, Ilya N., Samoilenko, Vladimir A., Svetoch, Eduard E., Sukhikh, Gennady T., Uversky, Vladimir N. and Karlyshev, Andrey V. (2020) S-layer protein 2 of 'Lactobacillus crispatus' 2029, its structural and immunomodulatory characteristics and roles in protective potential of the whole bacteria against foodborne pathogens. International Journal of Biological Macromolecules, 150, pp. 400-412. ISSN (print) 0141-8130

Abdel-Mageed, Wael M., Juhasz, Bertalan, Lehri, Burhan, Alqahtani, Ali S., Nouioui, Imen, Pech‐Puch, Dawrin, Tabudravu, Jioji N., Goodfellow, Michael, Rodriguez, Jaime, Jaspars, Marcel and Karlyshev, Andrey V. (2020) Whole genome sequence of 'Dermacoccus abyssi' MT1.1 isolated from the Challenger Deep of the Mariana Trench reveals phenazine biosynthesis locus and environmental adaptation factors. Marine Drugs, 18(3), p. 131. ISSN (print) 1660-3397

da Silva, Ronni A G, Karlyshev, Andrey V., Oldfield, Neil J, Wooldridge, Karl G, Bayliss, Christopher D, Ryan, Ali and Griffin, Ruth (2020) Corrigendum: Variant signal peptides of vaccine antigen, FHbp, impair processing affecting surface localization and antibody-mediated killing in most meningococcal isolates. Frontiers in Microbiology, 11, p. 55. ISSN (online) 1664-302X

da Silva, Ronni A. G., Karlyshev, Andrey V., Oldfield, Neil J., Wooldridge, Karl G., Bayliss, Christopher D., Ryan, Ali and Griffin, Ruth (2019) Variant signal peptides of vaccine antigen, FHbp, impair processing affecting surface localization and antibody-mediated killing in most meningococcal isolates. Frontiers in Microbiology, 10, p. 2847. ISSN (online) 1664-302X

Weeks, Richard M., Moretti, Alysha, Song, Shuang, Uhrich, Kathryn E., Karlyshev, Andrey V. and Chikindas, Michael L. (2019) Cationic amphiphiles against 'Gardnerella vaginalis' resistant strains and bacterial vaginosis-associated pathogens. Pathogens and Disease, 77(8), ftz059. ISSN (online) 2049-632X

Karlyshev, A.V., Kudryashova, E.B., Ariskina, E.Y., Lavrentyeva, E.V and Barkhutova, D.D. (2019) Whole-genome sequencing of Xanthomonadaceae strain Alg18-2.2, isolated from the Saline Lake Gudzhirganskoe in the Republic of Buryatia, Russia. Microbiology Resource Announcements, 8, e01112-e01119. ISSN (online) 2576-098X

Ramesh, Amritha, Ikeda, Naomi, Rubinchik, Sona and Karlyshev, Andrey V. (2019) Expression of Escherichia coli araE and modified lacY genes in Campylobacter jejuni is not sufficient for arabinose transport. Access Microbiology, ISSN (online) 2516-8290

Karlyshev, Andrey V. (2019) Remarkable features of mitochondrial DNA of 'Acanthamoeba polyphaga' Linc Ap-1, revealed by whole-genome sequencing. Microbiology Resource Announcements, 8(25), e00430-19. ISSN (online) 2576-098X

Abramov, Vyacheslav M., Kosarev, Igor V., Motin, Valdimir L., Khlebnikov, Valentin S., Vasilenko, Raisa N., Sakulin, Vadim K., Machulin, Andrey V., Uversky, Vladimir N. and Karlyshev, Andrey V. (2019) Binding of LcrV protein from 'Yersinia pestis' to human T-cells induces apoptosis, which is completely blocked by specific antibodies. International Journal of Biological Macromolecules, 122, pp. 1062-1070. ISSN (print) 0141-8130

Karlyshev, Andrey (2018) Cohnella kolymensis sp. nov., a novel bacillus isolated from Siberian permafrost. International Journal of Systematic and Evolutionary Microbiology, 68, pp. 2912-2917. ISSN (print) 1466-5026

Karlyshev, Andrey (2018) Antagonistic activity of a consortium of strains 'Lactobacillus fermentum' ВКМ В-2793D and 'Lactobacillus reuteri' ВКМ В-3144D isolated from human milk to mastitis-inductioning pathogens. Biomedicine, 3, pp. 46-54. ISSN (print) 2074-5982

Vieira, Ana, Ramesh, Amritha, Seddon, Alan and Karlyshev, Andrey (2017) CmeABC multidrug efflux pump contributes to antibiotic resistance and promotes 'Campylobacter jejuni' survival and multiplication in 'Acanthamoeba polyphaga'. Applied and Environmental Microbiology, 83(22), e01600-17. ISSN (online) 1098-5336

da Silva, RAG, Churchward, CP, Karlyshev, AV, Eleftheriadou, O, Snabaitis, AK, Longman, MR, Ryan, A and Griffin, R (2017) The role of apolipoprotein N-acyl transferase, Lnt, in the lipidation of Factor H binding protein of ' Neisseria meningitidis ' strain MC58 and its potential as a drug target. British Journal of Pharmacology, 174(14), pp. 2247-2260. ISSN (print) 0007-1188

Lehri, B., Seddon, A. M. and Karlyshev, A. V. (2017) The hidden perils of read mapping as a quality assessment tool in genome sequencing. Scientific Reports, 7(43149), ISSN (online) 2045-2322

Lehri, Burhan, Seddon, Alan M. and Karlyshev, Andrey V. (2017) Potential probiotic-associated traits revealed from completed high quality genome sequence of Lactobacillus fermentum 3872. Standards in Genomic Sciences, 12(19), ISSN (online) 1944-3277

Garcia, Apolinaria, Navarro, Karen, Sanhueza, Enrique, Pineda, Susana, Pastene, Edgar, Quezada, Manuel, Henríquez, Karem, Karlyshev, Andrey, Villena, Julio and González, Carlos (2017) Characterization of Lactobacillus fermentum UCO-979C, a probiotic strain with a potent anti-Helicobacter pylori activity. Electronic Journal of Biotechnology, 25, pp. 75-83. ISSN (online) 0717-3458

Lehri, B., Seddon, A. M. and Karlyshev, A. V. (2017) 'Lactobacillus fermentum' 3872 as a potential tool for combatting 'Campylobacter jejuni' infections. Virulence, 8(8), pp. 1753-1760. ISSN (print) 2150-5594

Atas, Ali, Seddon, Alan M., Ford, Donna C., Cooper, Ian A., Wren, Brendan W., Oyston, Petra C. F. and Karlyshev, Andrey V. (2016) YPTB3816 of 'Yersinia pseudotuberculosis' strain IP32953 is a virulence-related metallo-oligopeptidase. BMC Microbiology, 16(282), ISSN (online) 1471-2180

Karlyshev, Andrey V., Kudryashova, Ekaterina B. and Ariskina, Elena V. (2016) Draft genome sequence of 'Cohnella kolymensis' B-2846. Genome Announcements, 4(1), e01587-15. ISSN (online) 2169-8287

Karlyshev, Andrey V., Khlebnikov, Valentin C., Kosarev, Igor V. and Abramov, Vyacheslav M. (2016) Draft genome sequence of Lactobacillus plantarum 2025. Genome Announcements, 4(1), e01532-15. ISSN (online) 2169-8287

Lehri, Burhan, Seddon, Alan and Karlyshev, Andrey (2015) ' Lactobacillus fermentum ' 3872 genome sequencing reveals plasmid and chromosomal genes potentially involved in a probiotic activity. FEMS microbiology letters, 362(11), ISSN (print) 1574-6968

Vieira, Ana, Seddon, Alan and Karlyshev, Andrey V. (2015) Campylobacter-Acanthamoeba interactions. Microbiology, 161(5), pp. 933-947. ISSN (print) 1350-0872

Karlyshev, Andrey, Lehri, Burhan and Vieira, Ana (2015) Specific genetic features of 'Campylobacter jejuni' strain G1 revealed by genome sequencing. FEMS Microbiology Letters, 362(4), pp. 1-3. ISSN (print) 0378-1097

Karlyshev, Andrey V., Villena, Julio, Gonzalez, Carlos, Albarracin, Leonardo, Barros, Javier and Garcia, Apolinaria (2015) Draft Genome Sequence of a Probiotic Strain, Lactobacillus fermentum UCO-979C. Genome Announcements, 3(6), e01439-15. ISSN (online) 2169-8287

Karlyshev, Andrey V, Snyder, Lori A S, McFadden, Johnjoe and Griffin, Ruth (2015) Insight into proteomic investigations of Neisseria meningitidis serogroup C strain L91543 from analysis of its genome sequence. FEMS Microbiology Letters, 362(9), ISSN (print) 0378-1097

Abramov, Vyacheslav, Khlebnikov, Valentin, Kosarev, Igor, Bairamova, Guldana, Vasilenko, Raisa, Suzina, Natalia, Machulin, Andrey, Sakulin, Vadim, Kulikova, Natalia, Vasilenko, Nadezhda, Karlyshev, Andrey, Uversky, Vladimir, Chikindas, Michael L. and Melnikov, Vyacheslav (2014) Probiotic properties of Lactobacillus crispatus 2,029: homeostatic interaction with cervicovaginal epithelial cells and antagonistic activity to genitourinary pathogens. Probiotics and Antimicrobial Proteins, 6(3), pp. 165-176. ISSN (print) 1867-1306

Karlyshev, Andrey V, Melnikov, Vyacheslav G and Chistyakov, Vladimir A (2014) Draft genome sequence of Bacillus amyloliquefaciens B-1895. Genome Announcements, 2(3), ISSN (print) 2169-8287

Karlyshev, Andrey V, Melnikov, Vyacheslav G and Chikindas, Michael L (2014) Draft genome sequence of Bacillus subtilis strain KATMIRA1933. Genome announcements, 2(3), ISSN (print) 2169-8287

Karlyshev, Andrey V, Robyn, Joris, Rasschaert, Geertrui and Heyndrickx, Marc (2014) Draft genome sequence of Enterococcus faecalis MB5259. Genome Announcements, 2(3), ISSN (print) 2169-8287

Karlyshev, A.V., Thacker, G., Jones, M.A., Clements, M.O. and Wren, B.W. (2014) 'Campylobacter jejuni' gene cj0511 encodes a serine peptidase essential for colonisation. FEBS Open Bio, 4, pp. 468-472. ISSN (online) 2211-5463

Rubinchik, Sona, Seddon, Alan and Karlyshev, Andrey (2014) A negative effect of Campylobacter capsule on bacterial interaction with an analogue of a host cell receptor. BMC Microbiology, 14(141), ISSN (online) 1471-2180

van Alphen, Lieke B., Wenzel, Cory Q., Richards, Michele R., Fodor, Christopher, Ashmus, Roger A., Stahl, Martin, Karlyshev, Andrey, Wren, Brendan W., Stintzi, Alain, Miller, William G., Lowary, Todd L. and Szymanski, Christine M. (2014) Biological Roles of the O-Methyl Phosphoramidate Capsule Modification in Campylobacter jejuni. PloS one, 9(1), e87051. ISSN (online) 1932-6203

Karlyshev, Andrey V., Melnikov, Vyacheslav G., Khlebnikov, Valentin C. and Abramov, Vyacheslav M. (2014) Draft Genome Sequence of Lactobacillus crispatus 2029. Genome Announcements, 2(1), e01221-13. ISSN (online) 2169-8287

Karlyshev, Andrey V. and Abramov, Vyacheslav M. (2014) Draft Genome Sequence of Lactobacillus plantarum 2165. Genome Announcements, 2(1), e01179-13. ISSN (online) 2169-8287

Karlyshev, Andrey V., Melnikov, Vyacheslav G., Kosarev, Igor V. and Abramov, Vyacheslav M. (2014) Draft Genome Sequence of Lactobacillus rhamnosus 2166. Genome Announcements, 2(1), e01222-13. ISSN (online) 2169-8287

Karlyshev, Andrey and Melnikov, Vyacheslav G. (2013) Draft Genome Sequence of Corynebacterium pseudodiphtheriticum strain 090104 "Sokolov". Genome Announcements, 1(6), ISSN (online) 2169-8287

Karlyshev, Andrey V., Raju, Kavita and Abramov, Vyacheslav M (2013) Draft Genome Sequence of Lactobacillus fermentum Strain 3872. Genome Announcements, 1(6), ISSN (online) 2169-8287

Karlyshev, Andrey V., Nadarajah, Sindhujan and Abramov, Vyacheslav M (2013) Draft Genome Sequence of Lactobacillus jensenii Strain MD IIE-70(2). Genome Announcements, 1(6), ISSN (online) 2169-8287

Karlyshev, A.V., Melnikov, V.G., Kosarev, I.V., Khlebnikov, V.C., Sukhikh, G.T. and Abramov, V.M. (2013) Draft Genome Sequence of Lactobacillus gasseri Strain 2016. Genome Announcements, 22(1), ISSN (online) 2169-8287

Karlyshev, A. V., Quail, M. A., Parkhill, J. and Wren, B. W. (2013) Unusual features in organisation of capsular polysaccharide-related genes of C-jejuni strain X. Gene, 522(1), pp. 37-45. ISSN (print) 0378-1119

Rubinchik, S., Seddon, A. and Karlyshev, Andrey V. (2012) Molecular mechanisms and biological role of Campylobacter jejuni attachment to host cells. European Journal of Microbiology and Immunology, 2(1), pp. 32-40. ISSN (print) 2062-509X

Ikeda, N. and Karlyshev, Andrey V. (2012) Putative mechanisms and biological role of coccoid form formation in Campylobacter jejuni. European Journal of Microbiology and Immunology, 2(1), pp. 41-49. ISSN (print) 2062-509X

Champion, Olivia L., Karlyshev, Andrey, Cooper, A. M., Ford, Donna C., Wren, Brendan W., Duffield, Melanie, Oyston, Petra C. F. and Titball, Richard W. (2011) 'Yersinia pseudotuberculosis' mntH functions in intracellular manganese accumulation, which is essential for virulence and survival in cells expressing functional Nramp1. Microbiology, 157(4), pp. 1115-1122. ISSN (print) 1350-0872

Abramov, VM, Khlebnikov, VS, Kosarev, I, Vasilenko, RN, Sakulin, VK, Hodyakova, AV, Galev, EE, Karlyshev, VA and Uversky, VN (2011) IL-1/TLR recognising system is a target for virulence factors of ' Yersinia pestis '. Science and Modernity, 13(1), pp. 186-188.

Champion, Olivia L, Karlyshev, Andrey V, Senior, Nicola J, Woodward, Martin, La Ragione, Roberto, Howard, Sarah L, Wren, Brendan W and Titball, Richard W (2010) Insect infection model for Campylobacter jejuni reveals that O-methyl phosphoramidate has insecticidal activity. The Journal of Infectious Diseases, 201(5), pp. 776-782. ISSN (print) 0022-1899

Stubben, Chris J, Duffield, Melanie L, Cooper, Ian A, Ford, Donna C, Gans, Jason D, Karlyshev, Andrey, Lingard, Brian, Oyston, Petra C F, de Rochefort, Anna, Song, Jian, Wren, Brendan W, Titball, Rick W and Wolinsky, Murray (2009) Steps toward broad-spectrum therapeutics : discovering virulence-associated genes present in diverse human pathogens. BMC Genomics, 10(501), pp. 1-9. ISSN (online) 1471-2164

Champion, Olivia L, Coope, Ian A M, James, Sarah L, Ford, Donna, Karlyshev, Andrey, Wren, Brendan W, Duffield, Melanie, Oyston, Petra C F and Titball, Richard W (2009) Galleria mellonella as an alternative infection model for Yersinia pseudotuberculosis. Microbiology, 155(5), 1516 -1522.

Corcionivoschi, N, Clyne, M, Lyons, A, Elmi, A, Gundogdu, O, Wren, B W, Dorrell, N, Karlyshev, A V and Bourke, B (2009) Campylobacter jejuni cocultured with epithelial cells reduces surface capsular polysaccharide expression. Infection and Immunity, 77(5), pp. 1959-1967. ISSN (print) 0019-9567

Howard, SL, Jagannathan, A, Soo, EC, Hui, JPM, Aubry, AJ, Ahmed, I, Karlyshev, Andrey, Kelly, JF, Jones, MA, Stevens, MP, Logan, SM and Wren, BW (2009) Campylobacter jejuni Glycosylation Island important in cell charge, legionaminic acid biosynthesis, and colonization of chickens. Infection and Immunity, 77(6), pp. 2544-2556. ISSN (print) 0019-9567

McNally, D. J., Lamoureux, M. P., Karlyshev, A. V., Fiori, L. M., Li, J., Thacker, G., Coleman, R. A., Khieu, N. H., Wren, B. W., Brisson, J., Jarrell, H. C. and Szymanski, C. M. (2007) Commonality and Biosynthesis of the O-Methyl Phosphoramidate Capsule Modification in Campylobacter jejuni. Journal of Biological Chemistry, 282(39), pp. 28566-28576. ISSN (print) 0021-9258

Joshua, G. W. P., Guthrie-Irons, C. and Karlyshev, A. V. (2006) Biofilm formation in Campylobacter jejuni. Microbiology, 152(2), pp. 387-396. ISSN (print) 1350-0872

Karlyshev, A. V. and Wren, B. W. (2005) Development and application of an insertional system for gene delivery and expression in Campylobacter jejuni. Applied and Environmental Microbiology, 71(7), pp. 4004-4013. ISSN (print) 0099-2240

Karlyshev, Andrey V., Ketley, Julian M. and Wren, Brendan W. (2005) The Campylobacter jejuni glycome. FEMS microbiology reviews, 29(2), pp. 377-390. ISSN (print) 0168-6445

Linton, Dennis, Dorrell, Nick, Hitchen, Paul G., Amber, Saba, Karlyshev, Andrey V., Morris, Howard R., Dell, Anna, Valvano, Miguel A., Aebi, Markus and Wren, Brenden W. (2005) Functional analysis of the Campylobacter jejuni N-linked protein glycosylation pathway. Molecular Microbiology, 55(6), pp. 1695-1703. ISSN (print) 0950-382X

Hitchen, P G, Dorrel, N, Amber, S, Karlyshev, Andrey, Morris, H R, Dell, A, Valvano, M A, Aebi, M and Wren, B W (2004) Functional analysis of a novel bacterial N-linked protein glycosylation pathway from Campylobacter jejuni. Glycobiology, 14(11), pp. 1124-1125.

Karlyshev, Andrey V., Champion, Olivia G., Churcher, Carol, Brisson, Jean-Robert, Jarrell, Harold G., Gilbert, Michael, Brochu, Denis, St Michael, Frank, Li, Jianjun, Wakarchuk, Warren W., Goodhead, Ian, Sanders, Mandy, Stevens, Kim, White, Brian, Parkhill, Julian, Wren, Brendan W. and Szymanski, Christine M. (2004) Analysis of Campylobacter jejuni capsular loci reveals multiple mechanisms for the generation of structural diversity and the ability to form complex heptoses. Molecular Microbiology, 55(1), pp. 90-103. ISSN (print) 0950-382X

Jones, M. A., Marston, K. L., Woodall, C. A., Maskell, D. J., Linton, D, Karlyshev, A. V., Dorrell, N, Wren, B. W. and Barrow, P. A. (2004) Adaptation of Campylobacter jejuni NCTC11168 to High-Level Colonization of the Avian Gastrointestinal Tract. Infection and Immunity, 72(7), pp. 3769-3776. ISSN (print) 0019-9567

Karlyshev, A. V., Everest, P, Linton, D, Cawthraw, S, Newell, D. G. and Wren, B. W. (2004) The Campylobacter jejuni general glycosylation system is important for attachment to human epithelial cells and in the colonization of chicks. Microbiology, 150(6), pp. 1957-1964. ISSN (print) 1350-0872

Joshua, G. W. P., Karlyshev, A. V., Smith, M. P., Isherwood, K. E., Titball, R. W. and Wren, B. W. (2003) A Caenorhabditis elegans model of Yersinia infection: biofilm formation on a biotic surface. Microbiology, 149(11), pp. 3221-3229. ISSN (print) 1350-0872

Linton, D, Allan, E, Karlyshev, A.V., Cronshaw, A.D. and Wren, B.W. (2002) Identification of N-acetylgalactosamine-containing glycoproteins PEB3 and CgpA in Campylobacter jejuni. Molecular Microbiology, 43(2), pp. 497-508. ISSN (print) 0950-382X

Karlyshev, Andrey V, Linton, Dennis, Gregson, Norman A and Wren, Brendan W (2002) A novel paralogous gene family involved in phase-variable flagella-mediated motility in Campylobacter jejuni. Microbiology, 148(2), pp. 473-480. ISSN (print) 1350-0872

Karlyshev, A V, Oyston, P C, Williams, K, Clark, G C, Titball, R W, Winzeler, E A and Wren, B W (2001) Application of high-density array-based signature-tagged mutagenesis to discover novel Yersinia virulence-associated genes. Infection and immunity, 69(12), pp. 7810-7819. ISSN (print) 0019-9567

Parkhill, J, Wren, B W, Thomson, N R, Titball, R W, Holden, M T, Prentice, M B, Sebaihia, M, James, K D, Churcher, C, Mungall, K L, Baker, S, Basham, D, Bentley, S D, Brooks, K, Cerdeño-Tárraga, A M, Chillingworth, T, Cronin, A, Davies, R M, Davis, P, Dougan, G, Feltwell, T, Hamlin, N, Holroyd, S, Jagels, K, Karlyshev, A V, Leather, S, Moule, S, Oyston, P C, Quail, M, Rutherford, K, Simmonds, M, Skelton, J, Stevens, K, Whitehead, S and Barrell, B G (2001) Genome sequence of Yersinia pestis, the causative agent of plague. Nature, 413(6855), pp. 523-527. ISSN (print) 0028-0836

Dorrell, Nick, Mangan, Joseph A., Laing, Kenneth G., Hinds, Jason, Linton, Dennis, Al-Ghusein, Hasan, Barrell, Bart G., Parkhill, Julian, Stoker, Neil G., Karlyshev, Andrey V., Butcher, Philip D. and Wren, Brendan W. (2001) Whole genome comparison of 'Campylobacter jejuni' human isolates using a low-cost microarray reveals extensive genetic diversity. Genome Research, 11(10), pp. 1706-1715. ISSN (print) 1088-9051

Karlyshev, A V, McCrossan, M V and Wren, B W (2001) Demonstration of polysaccharide capsule in Campylobacter jejuni using electron microscopy. Infection and immunity, 69(9), pp. 5921-5924. ISSN (print) 0019-9567

Wren, B W, Linton, D, Dorrell, N and Karlyshev, A V (2001) Post genome analysis of Campylobacter jejuni. Symposium series (Society for Applied Microbiology), 90(S6), 36S-44S. ISSN (print) 1467-4734

Linton, D, Karlyshev, A V and Wren, B W (2001) Deciphering Campylobacter jejuni cell surface interactions from the genome sequence. Current opinion in microbiology, 4(1), pp. 35-40. ISSN (print) 1369-5274

Karlyshev, A V and Wren, B W (2001) Detection and initial characterization of novel capsular polysaccharide among diverse Campylobacter jejuni strains using alcian blue dye. Journal of clinical microbiology, 39(1), pp. 279-284. ISSN (print) 0095-1137

Karlyshev, A V, Pallen, M J and Wren, B W (2000) Single-primer PCR procedure for rapid identification of transposon insertion sites. BioTechniques, 28(6), pp. 1078-1082. ISSN (print) 0736-6205

Linton, D, Karlyshev, A V, Hitchen, P G, Morris, H R, Dell, A, Gregson, N A and Wren, B W (2000) Multiple N-acetyl neuraminic acid synthetase (neuB) genes in Campylobacter jejuni: identification and characterization of the gene involved in sialylation of lipo-oligosaccharide. Molecular microbiology, 35(5), pp. 1120-1134. ISSN (print) 0950-382X

Parkhill, J, Wren, B W, Mungall, K, Ketley, J M, Churcher, C, Basham, D, Chillingworth, T, Davies, R M, Feltwell, T, Holroyd, S, Jagels, K, Karlyshev, A V, Moule, S, Pallen, M J, Penn, C W, Quail, M A, Rajandream, M A, Rutherford, K M, van Vliet, A H, Whitehead, S and Barrell, B G (2000) The genome sequence of the food-borne pathogen 'Campylobacter jejuni' reveals hypervariable sequences. Nature, 403(6770), pp. 665-668. ISSN (print) 0028-0836

Karlyshev, A V, Linton, D, Gregson, N A, Lastovica, A J and Wren, B W (2000) Genetic and biochemical evidence of a Campylobacter jejuni capsular polysaccharide that accounts for Penner serotype specificity. Molecular microbiology, 35(3), pp. 529-541. ISSN (print) 0950-382X

Chapman, D A, Zavialov, A V, Chernovskaya, T V, Karlyshev, A V, Zav'yalova, G A, Vasiliev, A M, Dudich, I V, Abramov, V M, Zav'yalov, V P and MacIntyre, S (1999) Structural and functional significance of the FGL sequence of the periplasmic chaperone Caf1M of Yersinia pestis. Journal of bacteriology, 181(8), pp. 2422-2429. ISSN (print) 0021-9193

Mikhailov, AM, Chernovskaya, TV, Vasil'ev, AM, Rudenko, EG, Kornev, AN, Kornilov, VV, Karlyshev, AV, MacIntyre, S, Abramov, VM, Zav'yalov, VP and Vainshtein, BK (1999) Preparation of chromatographically pure specimens, crystallization, and X-ray diffraction study of the periplasmatic chaperone protein Caf1M from Y-pestis. Crystallography Reports, 44, pp. 1010-1013. ISSN (print) 1063-7745

Karlyshev, A V, Henderson, J, Ketley, J M and Wren, B W (1999) Procedure for the investigation of bacterial genomes: random shot-gun cloning, sample sequencing and mutagenesis of Campylobacter jejuni. BioTechniques, 26(1), pp. 50-56. ISSN (print) 0736-6205

Karlyshev, A V, Henderson, J, Ketley, J M and Wren, B W (1998) An improved physical and genetic map of Campylobacter jejuni NCTC 11168 (UA580). Microbiology, 144(2), pp. 503-508. ISSN (print) 1350-0872

Swift, S, Karlyshev, A V, Fish, L, Durant, E L, Winson, M K, Chhabra, S R, Williams, P, Macintyre, S and Stewart, G S (1997) Quorum sensing in Aeromonas hydrophila and Aeromonas salmonicida : identification of the LuxRI homologs AhyRI and AsaRI and their cognate N-acylhomoserine lactone signal molecules. Journal of bacteriology, 179(17), pp. 5271-5281. ISSN (print) 0021-9193

Zav'yalov, V P, Chernovskaya, T V, Chapman, D A, Karlyshev, A V, MacIntyre, S, Zavialov, A V, Vasiliev, A M, Denesyuk, A I, Zav'yalova, G A, Dudich, I V, Korpela, T and Abramov, V M (1997) Influence of the conserved disulphide bond, exposed to the putative binding pocket, on the structure and function of the immunoglobulin-like molecular chaperone Caf1M of Yersinia pestis. Biochemical journal, 324 (, pp. 571-578. ISSN (print) 0264-6021

Chemovskaya, T V, Karlishev, Andrey, Navolotskaya, E V, Vasiliev, A M, Rudenko, E G, Abramov, V M, McIntyre, S H and Zav'yalov, V P (1997) Reception of human interleukin-1β by bacterial cells. Immunology Letters, 56, p. 211.

Karlyshev, A V and MacIntyre, S (1996) Study of the intergenic exeF-exeG region and its application as a simple preliminary test for Aeromonas spp. FEMS microbiology letters, 137(1), pp. 37-44. ISSN (print) 0378-1097

Karlyshev, A V and MacIntyre, S (1995) Cloning and study of the genetic organization of the exe gene cluster of Aeromonas salmonicida. Gene, 158(1), pp. 77-82. ISSN (print) 0378-1119

Zav'yalov, V P, Chernovskaya, T V, Navolotskaya, E V, Karlyshev, A V, MacIntyre, S, Vasiliev, A M and Abramov, V M (1995) Specific high affinity binding of human interleukin 1 beta by Caf1A usher protein of Yersinia pestis. FEBS letters, 371(1), pp. 65-68. ISSN (print) 0014-5793

Drozdov, I G, Anisimov, A P, Samoilova, S V, Yezhov, I N, Yeremin, S A, Karlyshev, A V, Krasilnikova, V M and Kravchenko, V I (1995) Virulent non-capsulate Yersinia pestis variants constructed by insertion mutagenesis. Journal of medical microbiology, 42(4), pp. 264-268. ISSN (print) 0022-2615

Abramov, V, Chernovskaya, T, Vasiliev, A, Karlishev, Andrey, Navolotskaya, E and Zav'yalov, V (1994) Interaction of human interleukin 1-beta with Escherichia coli cells transformed by capsular f1 operon Yersinia pestis. Cytokine, 6(5), 552- 552. ISSN (print) 1043-4666

Drozdov, I.G., Ezhov, I.N., Samoilova, S.V., Anisimov, A.P., Karlyshev, A.V., Kravchenko, V.I., Krasilnikova, V.M., Eremin, S.A. and Nikiforov, A.K. (1993) A method of generation of plague agent acapsular mutant. Problems of Particularly Dangerous Infections, 3(73), pp. 187-194.

Karlyshev, A V, Galyov, E E, Abramov, V M and Zav'yalov, V P (1992) Caf1R gene and its role in the regulation of capsule formation of Y. pestis. FEBS letters, 305(1), pp. 37-40. ISSN (print) 0014-5793

Karlyshev, A V, Galyov, E E, Smirnov, O Yu, Guzayev, A P, Abramov, V M and Zav'yalov, V P (1992) A new gene of the f1 operon of Y. pestis involved in the capsule biogenesis. FEBS letters, 297(1-2), pp. 77-80. ISSN (print) 0014-5793

Galyov, E. E., Karlishev, Andrey, Chernovskaya, T. V., Dolgikh, D. A., Smirnov, O. Yu, Volkovoy, K. I., Abramov, V. M. and Zav′yalov, V. P. (1991) Expression of the envelope antigen F1 of Y. pestis is mediated by the product of caf1M gene having homology with chaperon protein PapD of E. coli. FEBS Letters, 286(1-2), pp. 79-82. ISSN (print) 0014-5793

Galyov, E E, Smirnov, O Y, Karlyshev, Andrey, Volkovoy, K I, Denesyuk, A I, Nazimov, I V, Rubtsov, K S, Abramov, V M, Dalvadyanz, S M and Zav'yalov, V P (1990) Nucleotide sequence of the Y. pestis gene encoding F1 antigen and the primary structure of the protein. FEBS Letters, 277(1-2), pp. 230-232. ISSN (print) 0014-5793

Deev, S.M., Chuvpilo, S.A., Karlyshev, A.V., Mukhamedov, R.S. and Polyanovskii, O.L. (1982) Analysis and properties of a bacterial clone containing a fragment of the Immuno Globulin L chain gene. Genetika, 18(6), pp. 888-895. ISSN (print) 0016-6758

Deev, S.M., Karlyshev, A.V. and Polyanovskii, O.L. (1982) Construction and selection of bacterial clones hybridized with immuno globulin light chain messenger RNA. Genetika, 18(6), pp. 880-887. ISSN (print) 0016-6758

Deev, S M, Chuvpilo, S A, Karlyshev, A V, Mukhamedov, R S and Polianovskiĭ, O L (1982) [Analysis and properties of a bacterial clone containing a gene fragment of an immunoglobulin L chain]. Genetika, 18(6), pp. 888-895. ISSN (print) 0016-6758

Deev, S M, Karlyshev, A V and Polianovskiĭ, O L (1982) [Construction and selection of bacterial clones hybridized with the mRNA of a light-chain immunoglobulin]. Genetika, 18(6), pp. 880-887. ISSN (print) 0016-6758

Dejev, S., Muhamedov, R., Karlyshev, A., Aslanov, H. and Sadykov, A. (1982) Stability of DNA fragments of bacteriophage lambda cloned in E. coli using pBR322 vector. Reports of Academy of Science of Uzbek SSR, 1, pp. 45-48. ISSN (print) 0134-4307

Deev, S M, Karlyshev, A V and Polianovskiĭ, O L (1981) [Identification of a bacterial clone containing a fragment of the structural portion of an immunoglobulin light-chain gene]. Doklady Akademii nauk SSSR, 257(6), pp. 1481-3. ISSN (print) 0002-3264

Deev, S M, Mukhamedov, R S, Karlyshev, Andrey, Denisova, G F and Aslanov, K H A (1981) A modified crude lysate method for hybrid plasmid analysis. Uzbekskii Biologicheskii Zhurnal (in Russian), 6, pp. 9-12. ISSN (online) 0024-1685

Deev, S M, Barbakar', N I, Karlyshev, A V, Sakharova, N K and Grechko, V V (1980) [Synthesis of double-stranded DNA on light immunoglobulin chain matrix RNA]. Molekulyarnaya biologiya, 14(2), pp. 413-420. ISSN (print) 0026-8984

Deev, S M, Barkabar', N I, Karlyshev, A V, Grechko, V V and Polianovskiĭ, O L (1979) [Enzymatic synthesis of the structural gene of MORC-21 myeloma immunoglobulin light chains]. Doklady Akademii nauk SSSR, 248(2), pp. 469-471. ISSN (print) 0002-3264

Polyanovsky, O L, Nosikov, V V, Zhuze, A L, Braga, E A and Karlyshev, A V (1979) Regulation of restriction endonuclease activity with antibiotics. Advances in enzyme regulation, 17, pp. 307-321. ISSN (print) 0065-2571

Nosikov, V V, Braga, E A, Karlyshev, Andrey, Zhuze, A L and Polyanovsky, O L (1976) Protection of particular cleavage sites of restriction endonucleases by DstA and AcD. Nucleic Acids Research, 3(9), pp. 2293-2301. ISSN (print) 0305-1048

Polianovskiĭ, O L, Karlyshev, A V, Braga, E A and Nosikov, V V (1976) [Mapping of phage lambda DNA using the antibiotic distamycin]. Doklady Akademii nauk SSSR, 229(2), pp. 500-503. ISSN (print) 0002-3264

Book Section

Karlyshev, Andrey, Wren, Brendan W and Moran, Anthony P (2008) Campylobacter jejuni Capsular Polysaccharide. In: Nachamkin, Irving , Szymanski, Christine M. and Blaser, Martin J., (eds.) Campylobacter. 3rd edition. Washington, DC, USA : American Society for Microbiology Press,. pp. 505-522. ISBN 9781555814373

Karlyshev, Andrey, Champion, O L, Joshua, G W P and Wren, B W (2005) The polysaccharide capsule of Campylobacter jejuni. In: Ketley, J M and Konkel, M E, (eds.) Campylobacter: Molecular and Cellular Biology. Horizon Bioscience. pp. 249-258. ISBN 190493305X

Tereshin, S., Kulikova, N., Sakulin, V., Puchkova, G., Vasilenko, R., Vasiliev, A., Kosarev, I., Khlebnikov, V., Karlyshev, A., Uversky, V. and Abramov, V. (2004) Pathogenetic role of minimal building blocks of 'Yersinia pestis' capsule: Caf1 dimers on early and late stages of pneumonic plague. In: O'Neill, Luke, (ed.) Procceedings of the International Cytokine Society Annual meeting. Bologna, Italy : Medimond Publishing. pp. 151-156. ISBN 9788875870133

Oyston, Petra C F, Karlyshev, Andrey V, Wren, Brendan W and Titball, Richard W (2003) Signature-tagged mutagenesis of Yersinia pestis. In: Skurnik, Mikael , Bengoechea, Jose Antonio and Granfors, Kaisa, (eds.) The Genus Yersinia: Entering the Functional Genomic Era. New York, USA : Kluwer Academic. pp. 39-42. (Advances in Experimental Medicine and Biology, 529) ISSN (print) 0065-2598 ISBN 9780306477591

Karlyshev, Andrey (2003) Structural base of the polyfunctional role of Caf1 protein and Caf1M chaperone in providing Yersinia pestis circulation in ecological systems of natural plague foci. In: Uversky, Vladimir N., (ed.) Protein Structures: Kaleidoscope of Structural Properties and Function. Kerala, India. : Research Signpost. 37/661 ISBN 8177361775

Karlyshev, A.V., Dorrell, N., Winzeler, E. and Wren, B.W. (2002) Further strategies for signature-tagged mutagenesis and the application of oligonucleotide microarrays for the quantification of DNA-tagged strains. In: Wren, Brendan and Dorrell, Nick, (eds.) Functional Microbial Genomics. London : Academic Press. pp. 167-184. (Methods in Microbiology, (33)) ISSN (print) 0580-9517 ISBN 9780125215336

Karlyshev, A., Galyov, E., Smirnov, O. and Zav'yalov, V. (1994) Structure and regulation of a gene cluster involved in capsule formation of Yersinia pestis. In: Op den Kamp, Jos A. F., (ed.) Biological Membranes: Structure, Biogenesis and Dynamics. Berlin, Germany : Springer-Verlag. pp. 321-330. (NATO ASI series: Cell biology, (82)) ISBN 9783540577317

Anisimov, A., Karlyshev, A., Pavlov, V. and Kravchenko, V. (1991) Construction of recombinant plasmids stably maintained in Y. pestis. In: Anisimov, A., (ed.) Genetics, Microbiology and Enhancement of Laboratory Diagnostics Methods of Particularly Dangerous Infections. Saratov, Russia : Federal state Public Health Russian reasearch anti "germs" institute "Microb". pp. 18-25.

Anisimov, A., Karlyshev, A., Kravchenko, V., Krasilnikova, V. and Kokushkin, A. (1991) Generation of avirulent Fra+, V+, Cad+, Fib-Coa+, PstI+, Psb+ mutants of Y. pestis. In: Anisimov, A., (ed.) Genetics, Microbiology and Enhancement of Laboratory Diagnostics Methods of Particularly Dangerous Infections. Saratov, Russia : Federal state Public Health Russian reasearch anti "germs" institute "Microb". pp. 29-33.

Conference or Workshop Item

Karlyshev, A. (2021) 'Campylobacter' genome reshuffling. In: World Microbe Forum; 21 - 24 Jun 2021, Held online. (Unpublished)

Karlyshev, Andrey (2020) Development of novel intervention strategies for fighting bacterial infections using whole genome sequencing of probiotic bacteria. In: 14th International Scientific Conference on Probiotics, Prebiotics, Gut Microbiota and Health - IPC2020; 11 Nov 2020, Prague, Czech Republic (Held online).

Espina, Laura and Karlyshev, Andrey (2019) Microbial cultivation approaches to enhance antibiotic discovery. In: Power of Microbes in Industry and Environment; 15 - 18 May 2019, Sv. Martin na Muri, Croatia. (Unpublished)

Kudryashova, Ekaterina, Ariskina, Elena, Karlyshev, Andrey, Vinokurova, Natalia, Streshinskaya, Galina and Evtushenko, Lyudmila (2018) 'Gordonibacillus kamchatkensis' gen. nov., sp. nov., a novel member of 'Paenibacillaceae' from frozen volcanic ash. In: XXXVII Annual Meeting of the European Culture Collections' Organisation; 13 - 15 Sep 2018, Moscow, Russia. (Unpublished)

Karlyshev, A.V. (2018) Application of the next generation genome sequencing for metagenomic analysis of dairy products. In: VIII International Conference on Environmental, Industrial and Applied Microbiology - BioMicroWorld2018; 24 - 25 Jun 2018, Torremolinos-Malaga, Spain. (Unpublished)

Karlyshev, Andrey (2017) Genome sequencing and probiotic properties of Lactobacillus Fermentum 3872. In: International Scientific Conference on Probiotics and Prebiotics - IPC 2017; 20 - 22 Jun 2017, Budapest, Hungary. (Unpublished)

Karlyshev, Andrey, Seddon, Alan, Ramesh, Amritha, Rubinchik, Sona and Ikeda, Naomi (2017) Expression of E. coli araE and mutated lacY genes in Campylobacter jejuni is not sufficient for arabinose transport. In: Annual Applied Microbiology Conference 2017; 3 – 6 Jul 2017, Gateshead, U.K..

Kudryashov, EB, Ariskin, EV and Karlyshev, Andrey (2016) Astro-biological aspects of the metagenomic analysis of late and early Pliocene permafrost samples of Siberia. In: All-Russian conference on astrobiology; 05 - 09 Jun 2016, Pushchino, Moscow Region, Russia.

Vieira, Ana, Seddon, Alan and Karlyshev, Andrey (2016) Molecular mechanisms of ' Campylobacter jejuni ' pathogenesis and survival in the environment. In: The Microbiology Society Annual Conference; 21-24 Mar 2016, Liverpool, U.K..

Lehri, Burhan, Seddon, Alan and Karlyshev, Andrey (2016) Potential use of ' Lactobacillus fermentum ' 3872 as an anti-campylobacter agent. In: The Microbiology Society Annual Conference; 21-24 Mar 2016, Liverpool, U.K..

Lehri, B., Seddon, A. and Karlyshev, A. (2014) Discovery and characterisation of a novel plasmid of a probiotic strain Lactobacillus fermentum 3872. In: International Conference on Antimicrobial Research; 01 - 03 Oct 2014, Madrid, Spain.

Karlyshev, A. V. (2014) Comparative genomics of probiotic bacteria and the development of novel antimicrobials. In: XVIII International Symposium on Gnotobiology; 21-24 Sep 2014, St Petersburg, Russian Federation.

Melnikov, V., Khlebniko, V., Kosarev, I., Sakulin, V., Vasilenko, R., Mescheryakov, A., Kulikova, N., Chistyakov, V., Ushakova, U., Kiryukhina, N., Ilyin, V., Chikindas, M., Karlyshev, A., Kuznetsov, B., Gruzdev, D., Kudryashova, E., Suzina, N. and Abramov, V. (2014) Is an idea of biofilm probiotics good or bad? In: XVIII International Symposium on Gnotobiology; 21-24 Sep 2014, St Petersburg, Russian Federation.

Karlyshev, A., Abramov, V., Hlebnikov, V., Kosarev, I., Melnikov, V. and Suhih, G. (2014) Genome sequencing of a probiotic strain Lactobacillus crispatus 2029 (Секвенирование генома пробиотического штамма Lactobacillus crispatus 2029 - in Russian). In: Genome Sequencing 2014; 14 - 15 May 2014, Moscow, Russia. (Conference proceedings (book of abstracts))

Wenzel, C.Q., van Alphen, L.B., Richards, M.R., Fodor, C., Ashmus, R.A., Stahl, M., Karlyshev, A.V., Wren, B.W., Stintzi, A., Miller, W.G., Lowary, T.L. and Szymanski, C.M. (2013) Biological roles of the O-methyl phosphoramidate capsule modification in Campylobacter jejuni. In: The 9th Annual National Carbohydrate Symposium; 8-10 May 2013, Banff, Canada. (Unpublished)

Karlyshev, Andrey, Seddon, Alan and Rubinchik, Sona (2013) Effect of capsule on interaction of Campylobacter jejuni cells with an analogue of a host cell receptor. In: 17th International Workshop on Campylobacter, Helicobacter and Related Organisms, CHRO2013; 15-19 Sep 2013, Aberdeen, United Kingdom.

Karlyshev, Andrey (2012) Campylobacter host cell receptors as targets for the development of novel antibacterials. In: II International Conference on Antimicrobial Research; 21-23 Nov 2012, Lisbon, Portugal.

Karlyshev, A.V., Seddon, A. and Rubinchik, S. (2012) The role of Campylobacter surface N-link glycosylated proteins and capsule in interaction with host cell receptors. In: II International Conference on Antimicrobial Research; 21-23 Nov 2012, Lisbon, Portugal.

Rubinchik, S., Seddon, A. and Karlyshev, A.V. (2012) Development of a novel in vitro assay for investigation of Campylobacter jejuni attachment to host cell receptors. In: CampyUK 2012 Conference; 6 Jan 2012, London, U.K..

Ikeda, N. and Karlyshev, A.V. (2012) The mechanism of coccoid form formation in Campylobacter jejuni. In: CampyUK 2012 Conference; 6 Jan 2012, London, U.K..

Karlyshev, A. (2011) Molecular mechanisms and biological role of Campylobacter coccoid form formation, and studies of bacterial adhesins and host cell receptors. In: CampyGerm’s Campylobacter Conference; 14-15 October 2011, Göttingen, Germany.

Ikeda, Naomi and Karlyshev, Andrey (2011) The role of spoT and amiA genes in coccoid form (CF) formation of Campylobacter jejuni. In: 16th International Workshop on Campylobacter, Helicobacter and Related Organisms; 28 Aug - 1 Sept, 2011, Vancouver, Canada.

Karlyshev, Andrey (2010) Bacterial cell shape determining factors of 'Campylobacter' as potential drug targets. In: International Congress on Antimicrobial Research ICAR2010; 03 - 05 Nov 2010, Valladolid, Spain. (Unpublished)

Karlyshev, A.V., Ikeda, N. and Snyder, L. (2010) Bacterial cell shape determining factors of Campylobacter as potential drug targets. In: International Conference on Antimicrobial Research (ICAR2010); 03 - 05 Nov 2010, Valladolid, Spain. (Unpublished)

Cooper, I.A.M., Ford, D.C., Karlyshev, A.V., Duffield, M.L. and Oyston, P.C.F. (2009) pepN : A target for the development of novel antimicrobials? In: Spring Meeting of the Society for General Microbiology; 30 Mar – 2 Apr 2009, Harrogate, U.K..

Oyston, Petra, Karlyshev, Andrey, Wren, Brendan and Titball, Richard (2007) Signature-tagged Mutagenesis of Yersinia pestis. In: 8th International Symposium on Yersinia; 4-8 Sept 2002, Turka, Finland. ISBN 9780387721231

Karlyshev, A., Thacker, G., Jones, M.A., Clements, M.O. and Wren, B.W. (2007) Campylobacter proteases and their role in colonization and stress responses. In: 14th International Workshop on Campylobacter, Helicobacter and Related Organisms; 2-5 Sept 2007, Rotterdam, The Netherlands.

Karlyshev, A.V. (2007) Genetics and properties of a novel capsule produced by untypable strain X of C. jejuni. In: 14th International Workshop on Campylobacter, Helicobacter and Related Organisms; 2-5 Sept 2007, Rotterdam, The Netherlands.

Corcionivoschi, N., Clyne, M., Lamoureux, M., Lyons, A., Wren, B., Dorell, N., Karlyshev, A., Szymanski, C. and Bourke, B. (2007) Alteration in bacterial polysaccharides following co-culture with human epithelial cells. In: 107th General Meeting of the American Society for Microbiology; 21 - 25 May 2007, Toronto, Canada.

Vasiliev, A., Kulikova, N., Khlebnikov, V., Kosarev, I., Sakulin, V., Vasilenko, R., Evstigneev, V., Scherbakov, G., Karlyshev, A., Uvesky, V. and Abramov, V. (2006) Y. pestis uses IL-1 and IL-1R for host immune response. In: International Symposium on Yersinia; 10 - 14 Oct 2006, Lexington, Kentucky, U.S.A..

McNally, D.J., Jarrell, H.C., Lamoureux, M., Coleman, R.A., Karlyshev, A.V., Wren, B.W., Brisson, J-R. and Szymanski, C.M. (2006) Where molecular pathogenesis and NMR spectroscopy collide: an integrated approach towards the development of a CPS-based therapy for 'Campylobacter jejuni'. In: Poultry Science Association: 95th Annual Meeting; 16 - 19 Jul 2006, Edmonton, Canada. (Unpublished)

Abramov, V., Khlebnikov, V., Kulikova, N., Kosarev, I., Sakulin, V., Potekhin, S., Husainova, R., Evstigneev, V., Scherbakov, G., Karlyshev, A., Uversky, V. and Vasiliev, A. (2006) Specific high affinity interaction of Yersinia LcrV with TLR2 does not depend on a cooperative structure of this antigen. In: TOLL2006: Recent Advances in Pattern Recognition; 4-7 March 2006, Salvador, Brasil.

Vasiliev, Anatoly M., Kulikova, Natalya L., Tereshin, Sergey N., Sakulin, Vadim K., Vasilenko, Raisa N., Kosarev, Igor V., Khlebnikov, Valentin S., Karlyshev, Andrey V., Uversky, Vladimir N., Evstigneev, Valentin I. and Abramov, Viacheslav M. (2004) Energetically independent chaperone-usher pathway formation of Caf1 dimers, functioning as Yersinia pestis stealthy adhesin or IL-1-like bacteriokine. In: Cytokines in Cancer and Immunity: Joint Meeting of the International Cytokine Society and the International Society for Interferon and Cytokine Research; 21-25 Oct, 2004, San Juan, Puerto Rico.

Abramov, Viacheslav M., Kulikova, Natalia L., Khlebnikov, Valentin S., Vasiliev, Anatoly M., Karlyshev, Andrey V., Kosarev, Igor V., Vasilenko, Raisa N., Tokhtamysheva, Natalia V., Sakulin, Vadim K., Evstigneev, Valentin I. and Uversky, Vladimir N. (2004) Large variety of Yersinia pestis adhesins. In: Cytokines in Cancer and Immunity: Joint Meeting of the International Cytokine Society and the International Society for Interferon and Cytokine Research; 21-25 Oct, 2004, San Juan, Puerto Rico.

Vasiliev, Anatoly M., Khlebnikov, Valentin S., Kulikova, Natalya L., Tereshin, Sergey N., Potekhin, Sergey A., Vasilenko, Raisa N., Kosarev, Igor V., Karlyshev, Andrey V., Uversky, Vladimir N., Scherbakov, Grigory Ya. and Abramov, Viacheslav M. (2004) A cooperative structure of Yersinia pestis LcrV bacteriokine. In: Cytokines in Cancer and Immunity: Joint Meeting of the International Cytokine Society and the International Society for Interferon and Cytokine Research; 21-25 Oct, 2004, San Juan, Puerto Rico.

Vasiliev, A., Kulikova, N., Tereshin, S., Sakulin, V., Vasilenkio, R., Kosarev, I., Khlebnikov, V., Karlyshev, A., Uversky, V. and Abramov, V. (2003) Yersinia pestis Caf1M chaperone forms energetically independently stealthy adhesins out of Caf1 dimers in periplasm, as a short distant weapon of plague. In: Annual Meeting of the International-Cytokine-Society; 20 - 24 Sep 2003, Dublin, Ireland. ISBN 8875870136

Karlyshev, A., Champion, O., Szymanski, C., Churcher, C., Brisson, J., Jarrell, H., Michael, F. S., Goodhead, I., Sanders, M., Stevens, K., White, B., Parkhill, J. and Wren, B. (2003) Comparative analysis of C. jejuni gene clusters involved in CPS biosynthesis. In: 12th International Workshop on Campylobacter, Helicobacter and Related Organisms; 6-10 Sept 2003, Aarhus, Denmark.

Jones, M., Marston, K., Woodall, C., Maskell, D., Karlyshev, A., Linton, D., Wren, B. and Kelly, D. (2003) In vivo and In vitro selection of C. jejuni NCTC11168: Development of a rational model for physiological studies of Campylobacter colonisation. In: 12th International Workshop on Campylobacter, Helicobacter and Related Organisms; 6-10 Sept 2003, Aarhus, Denmark.

Abramov, V., Kulikova, N., Khlebnikov, V., Vasiliev, A., Karlyshev, A., Kosarev, L., Vasilenko, R., Sakulin, V., Tereshin, S., Pchelintsev, S. and Uversky, V. (2003) Participation of the IL-1/TL receptors in plague pathogenesis. In: Annual Meeting of the International Cytokine Society; 20-24 Sept 2003, Dublin, Ireland. ISSN (print) 1148-5493

Tereshin, S., Kulikova, N., Sakulin, V., Puchcova, G., Vasilenkio, R., Vasiliev, A., Kosarev, I., Khlebnikov, V., Karlyshev, A., Uversky, V. and Abramov, V. (2003) Pathogenetic role of minimal building blocks of 'Yersinia pestis' capsule: Caf1 dimers on early and lates stages of Pneumonic plague. In: Annual Meeting of the International-Cytokine-Society; 20 - 24 Sep 2003, Dublin, Ireland. ISBN 9788875870133

Vasiliev, A., Kulikova, N., Sakulin, V., Khlebnikov, V., Kosarev, L., Uversky, V., Karlyshev, A., Vasilenko, R. and Abramov, V. (2003) Role of Caf1M chaperon in the formation of CAF1 dimers as Y. pestis adhesins interacting with IL-1R on cells. In: Annual Meeting of the International Cytokine Society; 20-24 Sept 2003, Dublin, Ireland. ISSN (online) 1148-5493

Abramov, V.M., Kulikova, N.L., Khlebnikov, V.S., Vasiliev, A.M., Karlyshev, AM., Kosarev, I.V., Vasilenko, R.N., Sakulin, V.K., Kozlovskaya, G.D., Pchelintsev, S. Yu., Shcherbakov, G. Ya. and Uversky, V.N. (2002) IL-1 receptors on host cells as one of mooring bitts for 'Yershinia pestis'. In: Joint Meeting of the International Society for Interferon and Cytokine Research, the International Cytokine Society, the Society for Leukocyte Biology, and the European Cytokine Society on Cytokines and Interferons; 06 - 10 Oct 2002, Turin, Italy.

Karlyshev, A.V., Linton, D. and Wren, B.W. (2001) Campylobacter jejuni proteins of Cj1318 family (Maf) are involved in flagella-mediated motility and phase variation. In: 11th International Workshop on Campylobacter, Helicobacter and related Organisms; 1-5 Sep 2001, Freiburg, Germany.

Linton, D., Allan, E., Karlyshev, A.V. and Wren, B.W. (2001) Identification of N-Acetylgalactosamine-containing glycoproteins PEB3 and CgpA in Campylobacter jejuni. In: 11th International Workshop on Campylobacter, Helicobacter and related Organisms; 1-5 Sep 2001, Freiburg, Germany.

Karlyshev, A.V. and Wren, B.W. (2001) Use of electron microscopy and Alcian Blue staining for the detection and characterisation of Campylobacter jejuni capsule. In: 11th International Workshop on Campylobacter, Helicobacter and related Organisms; 1-5 Sep 2001, Freiburg, Germany.

Dorrell, N., Linton, D., Karlyshev, A.V. and Wren, B.W. (2001) Whole genome comparison of Campylobacter jejuni human isolates using a low-cost microarray reveals extensive genetic diversity. In: 11th International Workshop on Campylobacter, Helicobacter and related Organisms; 1-5 Sep 2001, Freiburg, Germany.

Karlyshev, A.V., Oyston, P.C., Williams, K., Titbal, R.W., Davis, R., Winzeler, E.A. and Wren, B.W. (2000) Development of high-density DNA array based signature-tagged mutagenesis and its application for the discovery of novel Y. pseudotuberculosis virulence-associated genes. In: 18th International Congress of Biochemistry and Molecular Biology; 16 – 20 July 2000, Manchester, U.K..

Vasiliev, A., Uversky, V., Chernovskaya, T., Karlishev, Andrey, MacIntyre, Sh., Abramov, V. and Zav'yalov, V. (1999) The conformational properties of IL-1-like capsular protein CAF1 of Y. pestis and human IL-1beta. In: Seventh Annual Conference of the International Cytokine Society; 5-9 Dec 1999, South Carolina, U.S.A.. ISSN (online) 1043-4666

Manning, G., Spencer, A.E., Korolik, B., Wren, A., Karlyshev, A. and Newell, D.G. (1999) Identification and characterisation of Campylobacter jejuni genes involved in host cell invasion. In: 144th Meeting of the Society for General Microbiology; 7-10 Sept 1999, Leeds, U.K..

Linton, Dennis, Karlyshev, Andrey, Gregson, Norman A. and Wren, Brendan W. (1999) Multiple neuB genes in Campylobacter jejuni. In: 143rd Meeting of the Society for General Microbiology; 12 - 16 April 1999, Edinburgh, U.K..

Newell, D.G., Korolik, V., Manning, G., Chang, J., Karlyshev, A. and Wren, B.W. (1998) Identification and characterization of Campylobacter jejuni genes involved in a host cell invasion. In: 98th General Meeting of the American Society for Microbiology; 17-21 May 1998, Atlanta, Georgia, U.S.A.. ISSN (online) 1060-2011

Rudenko, E., Chernovskaya, T., Samaray, O., Vasiliev, A., Karlishev, A., Gankovskaya, O., Abramov, V. and Zav'yalov, V. (1997) Effect of human recombinant IL-1beta on expression of capsular subunit protein Caf1 of Yersinia pestis. In: Fifth Annual Conference of the International Cytokine Society; 9-13 Nov 1997, Tahoe, Nevada, U.S.A.. ISSN (online) 1043-4666

Chernovskaya, T., Karlishev, A., Navolot-Skaya, E., Vasiliev, A., Kosarev, I., Abramov, V., Macintyre, S. and Zav'yalov, V. (1997) Influence of virulence-associated surface structures of Yersinia pestis on binding of human recombinant interleukin 1beta to the bacterial cells. In: Fifth Annual Conference of the International Cytokine Society; 9-13 Nov 1997, Tahoe, Nevada, U.S.A.. ISSN (online) 1043-4666

Rudenko, E., Chernovskaya, T., Samaray, O., Vasiliev, A., Karlishev, A., Abramov, V. and Zav'yalov, V. (1997) Human recombinant IL-1beta inhibits expression of capsular subunit protein Caf1 of Yersinia pestis. In: Annual Meeting of the International Society for Interferon and Cytokine Research; 19-24 Oct 1997, San Diego, U.S.A.. ISSN (online) 1079-9907

Chernovskaya, T.V., Navolotskaya, E.V., Karlishev, A.V., Vasiliev, A.M., Rudenko, E.G., Abramov, V.M., Macintyre, Sh. and Zav'yalov, V.P. (1997) Interaction of human interleukin-1beta with bacterial cells. In: Annual Meeting of the International Society for Interferon and Cytokine Research; 19-24 Oct 1997, San Diego, U.S.A.. ISSN (online) 1079-9907

Zav'yalov, V.P., Chernovskaya, T.V., Navolotskaya, E.V., Karlyshev, A.V., Macintyre, S., Vasiliev, A.M. and Abramov, V.M. (1995) Specific high-affinity interception of human interleukin 1 signal by usher protein of Yersinia pestis. In: 9th International Congress of Immunology; 23-29 July 1995, San Francisco, U.S.A..

Chernovskaya, T.V., Karlyshev, A.V., Vasiliev, A.M., Rudenko, E.G., Abramov, V.M., Macintyre, Sh., Denesyuk, A.I. and Zav'yalov, V.P. (1995) Study of the structure and function of immunoglobulin-like molecular chaperone Caf1M of Y. pestis. In: 9th International Congress of Immunology; 23-29 July 1995, San Francisco, U.S.A..

Karlyshev, A.V., Galyov, E.E., Smirnov, O.Yu., Abramov, V.M. and Zav'yalov, V.P. (1992) Proteins of Y. pestis involved in the regulatioin of capsule formation. In: Symposium: Structure and Function of Regulatory Polypeptides; 26 - 30 June 1992, Moscow, Russia.

Patent

Priputnevich, Tatyana Valerevna [Inventor], Melkumyan, Alina Rantikovna [Inventor], Lyubasovskaya, Lyudmila Anatolevna [Inventor], Muraveva, Vera Vasilevna [Inventor], Zubkov, Viktor Vasilevich [Inventor], Abramov, Vyacheslav Mikhajlovich [Inventor], Khlebnikov, Valentin Sergeevich [Inventor], Kosarev, Igor Vasilevich [Inventor], Sakulin, Vadim Konstantinovich [Inventor], Vasilenko, Raisa Nikolaevna [Inventor], Machulin, Andrej Valerievich [Inventor], Karlyshev, Andrej Vladimirovich [Inventor], Samojlenko, Valdimir Aleksandrovich [Inventor], Melnikov, Vyacheslav Gennadevich [Inventor] and Uverskij, Vladimir Nikolaevich [Inventor] (2018) Not given Probiotic strain 'Lactobacillus gasseri' and its composition with lactoferrin for prevention of diarrhea, nerrocessing enterherolite and sepsis caused by 'Escherichia coli' strains in prematurely born children. .

Abramov, Vjacheslav Mikhajlovich [Inventor], Khlebnikov, Valentin Sergeevich [Inventor], Jur'evich, Pchelintsev Sergej [Inventor], Vasil'evich, Kosarev Igor' [Inventor], Karlyshev, Andrey Vladimirovich [Inventor], Vasilenko, Raisa Nikolaevna [Inventor] and Mel'nikov, Vjacheslav Gennad'evich [Inventor] (2014) Russian Federation Strain Lactobacillus fermentum having broad spectrum of antagonistic activity and probiotic lactobacteria consortium for manufacturing bacterial preperations. 2528862.

Karlyshev, A.V. [Inventor] and Wren, B.W. [Inventor] (2003) London School of Hygiene and Tropical Medicine Virulence peptides of the Genus Yersinia and uses thereof. WO2003044047 A3.

Karlyshev, A. V. [Inventor], Kravchenko, V. [Inventor], Krasilnikova, V. M. [Inventor] and Anisimov, A. P. [Inventor] (1992) Vnii Prikladnoj Mikrobiologii Method for preparation of plague microbe mutants with deficient synthesis of capsule antigen of fraction I. Class C12N15/01, Patent No SU1754779.