Article

Dyrka, W., Nebel, J.C. and Kotulska, M (2013) Probabilistic grammatical model of protein language and its application to helix-helix contact site classification. Algorithms for Molecular Biology, 8(31), ISSN (online) 1748-7188

Conference or Workshop Item

Dyrka, Witold, Nebel, Jean-Christophe and Kotulska, Malgorzata (2012) Structural annotation of proteins using probabilistic context-free grammars. In: International Workshop on Machine Learning in Systems Biology 2012; 08 - 09 Sep 2012, Basel, Switzerland. (Unpublished)

Dyrka, Witold, Nebel, Jean-Christophe and Kotulska, Malgorzata (2010) Towards 3D modeling of interacting TM helix pairs based on classification of helix pair sequences. In: 5th IAPR International Conference on Pattern Recognition in Bioinformatics; 22 Sept - 24 Sept 2010, Nijmegen, The Netherlands. ISBN 9783642160004

Dyrka, Witold, Nebel, Jean-Christophe and Kotulska, Margaret (2008) Poster: Structure prediction of a protein channel based on probabilistic formal grammars and the continuous ion flow model. In: Gliwice Scientific Meetings; 21 - 22 Nov 2008, Gliwice, Poland.

Dyrka, W., Kotulska, M and Nebel, J.-C. (2008) Structure prediction of a protein channel based on probabilistic formal grammars and the continuous ion flow model. In: European Conference on Computational Biology; 22 Sept - 26 Sept 2008, Cagliari, Italy.

Dyrka, Witold and Nebel, Jean-Christophe (2007) Probabilistic context-free grammar for the detection of binding sites from a protein sequence. In: BioSysBio 2007: Systems Biology, Bioinformatics and Synthetic Biology; 11 Jan - 13 Jan 2007, Manchester, UK.

Thesis

Dyrka, Witold (2007) Probabilistic context-free grammar for pattern detection in protein sequences. (MSc(R) thesis), Kingston University, .